SeqAn3
The Modern C++ library for sequence analysis.
format_vienna.hpp File Reference

Provides the seqan3::format_vienna tag and the seqan3::sequencestrucure_file_input_format and seqan3::strucure_file_output_format specialisation for this tag. More...

#include <cstdio>
#include <iterator>
#include <stack>
#include <string>
#include <string_view>
#include <type_traits>
#include <vector>
#include <range/v3/algorithm/copy.hpp>
#include <range/v3/view/chunk.hpp>
#include <range/v3/view/drop_while.hpp>
#include <range/v3/view/join.hpp>
#include <range/v3/view/remove_if.hpp>
#include <range/v3/view/transform.hpp>
#include <seqan3/alphabet/structure/wuss.hpp>
#include <seqan3/core/char_operations/predicate.hpp>
#include <seqan3/core/type_traits/range.hpp>
#include <seqan3/io/detail/misc.hpp>
#include <seqan3/io/stream/iterator.hpp>
#include <seqan3/io/structure_file/detail.hpp>
#include <seqan3/io/structure_file/input_format_concept.hpp>
#include <seqan3/io/structure_file/input_options.hpp>
#include <seqan3/io/structure_file/output_format_concept.hpp>
#include <seqan3/io/structure_file/output_options.hpp>
#include <seqan3/range/shortcuts.hpp>
#include <seqan3/range/detail/misc.hpp>
#include <seqan3/range/view/char_to.hpp>
#include <seqan3/range/view/istreambuf.hpp>
#include <seqan3/range/view/to_char.hpp>
#include <seqan3/range/view/take.hpp>
#include <seqan3/range/view/take_line.hpp>
#include <seqan3/range/view/take_until.hpp>
#include <seqan3/std/algorithm>
#include <seqan3/std/ranges>
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Go to the source code of this file.

Classes

struct  seqan3::format_vienna
 The Vienna format (dot bracket notation) for RNA sequences with secondary structure. More...
 

Namespaces

 seqan3
 The main SeqAn3 namespace.
 

Detailed Description

Provides the seqan3::format_vienna tag and the seqan3::sequencestrucure_file_input_format and seqan3::strucure_file_output_format specialisation for this tag.

Author
Jörg Winkler <j.winkler AT fu-berlin.de>