Here is a list of all documented class members with links to the class documentation for each member:
- o -
- off_type()
: seqan3::IStream
, seqan3::OStream
- offset()
: seqan3::bi_fm_index_cursor< index_t >
- offset_char
: seqan3::phred42
, seqan3::phred63
, seqan3::phred68legacy
- offset_column_type
: seqan3::structure_file_input< traits_type_, selected_field_ids_, valid_formats_, stream_char_type_ >
- offset_container
: seqan3::structure_file_input_default_traits_rna
, seqan3::StructureFileInputTraits
- offset_phred
: seqan3::phred42
, seqan3::phred63
, seqan3::phred68legacy
- offset_type
: seqan3::alignment_file_input< traits_type_, selected_field_ids_, valid_formats_, stream_char_type_ >
, seqan3::structure_file_input< traits_type_, selected_field_ids_, valid_formats_, stream_char_type_ >
, seqan3::structure_file_input_default_traits_rna
, seqan3::StructureFileInputTraits
- operator alphabet_type()
: seqan3::alphabet_proxy< derived_type, alphabet_type >
- operator other_alph_t()
: seqan3::semialphabet_any< size >
- operator std::string()
: seqan3::small_string< capacity_ >
- operator type()
: seqan3::alphabet_tuple_base< derived_type, component_types >
- operator!=()
: seqan3::aligned_allocator< value_t, alignment_v >
, seqan3::bi_fm_index< is_collection, sdsl_index_type_ >
, seqan3::bi_fm_index_cursor< index_t >
, seqan3::bitcompressed_vector< alphabet_type >
, seqan3::concatenated_sequences< inner_type, data_delimiters_type >
, seqan3::fm_index< is_collection, sdsl_index_type_ >
, seqan3::fm_index_cursor< index_t >
, seqan3::gap_decorator< inner_type >
, seqan3::gap_scheme< score_t >
, seqan3::pod_tuple< type0 >
, seqan3::pod_tuple< type0, types... >
, seqan3::scoring_scheme_base< derived_t, alphabet_t, score_t >
, seqan3::small_vector< value_type_, capacity_ >
, std::EqualityComparable
- operator""_aa10li()
: seqan3::aa10li
- operator""_aa10murphy()
: seqan3::aa10murphy
- operator""_aa20()
: seqan3::aa20
- operator""_aa27()
: seqan3::aa27
- operator""_cigar_op()
: seqan3::cigar_op
- operator""_db3()
: seqan3::dot_bracket3
- operator""_dna15()
: seqan3::dna15
- operator""_dna4()
: seqan3::dna4
- operator""_dna5()
: seqan3::dna5
- operator""_dssp9()
: seqan3::dssp9
- operator""_phred42()
: seqan3::phred42
- operator""_phred63()
: seqan3::phred63
- operator""_phred68legacy()
: seqan3::phred68legacy
- operator""_rna15()
: seqan3::rna15
- operator""_rna4()
: seqan3::rna4
- operator""_rna5()
: seqan3::rna5
- operator""_sam_dna16()
: seqan3::sam_dna16
- operator""_wuss51()
: seqan3::wuss< SIZE >
- operator()()
: seqan3::arithmetic_range_validator
, seqan3::file_validator_base
, seqan3::input_directory_validator
, seqan3::input_file_validator
, seqan3::output_directory_validator
, seqan3::output_file_validator
, seqan3::regex_validator
, seqan3::sequence_end_gap_specifier_base< value_t, _is_static, _value >
, seqan3::Validator
, seqan3::value_list_validator< option_value_type >
, std::hash< alphabet_t >
, std::hash< urng_t >
- operator+
: seqan3::small_string< capacity_ >
- operator<()
: seqan3::bitcompressed_vector< alphabet_type >
, seqan3::concatenated_sequences< inner_type, data_delimiters_type >
, seqan3::gap_decorator< inner_type >
, seqan3::pod_tuple< type0 >
, seqan3::pod_tuple< type0, types... >
, seqan3::small_vector< value_type_, capacity_ >
, std::StrictTotallyOrdered
- operator<<()
: seqan3::debug_stream_type
, seqan3::OStream
, seqan3::small_string< capacity_ >
- operator<=()
: seqan3::bitcompressed_vector< alphabet_type >
, seqan3::concatenated_sequences< inner_type, data_delimiters_type >
, seqan3::gap_decorator< inner_type >
, seqan3::pod_tuple< type0 >
, seqan3::pod_tuple< type0, types... >
, seqan3::small_vector< value_type_, capacity_ >
, std::StrictTotallyOrdered
- operator=()
: seqan3::aa10li
, seqan3::aa10murphy
, seqan3::aa20
, seqan3::aa27
, seqan3::aligned_allocator< value_t, alignment_v >
, seqan3::alignment_coordinate
, seqan3::alignment_file_header< ref_ids_type >
, seqan3::alignment_file_input< traits_type_, selected_field_ids_, valid_formats_, stream_char_type_ >
, seqan3::alignment_file_output< selected_field_ids_, valid_formats_, stream_char_type_, ref_ids_type >
, seqan3::alignment_range< alignment_executor_type >
, seqan3::alignment_result< alignment_result_traits >
, seqan3::alphabet_base< derived_type, size, char_t >
, seqan3::alphabet_base< derived_type, 1ul, char_t >
, seqan3::alphabet_tuple_base< derived_type, component_types >
, seqan3::alphabet_variant< alternative_types >
, seqan3::argument_parser
, seqan3::bi_fm_index< is_collection, sdsl_index_type_ >
, seqan3::bi_fm_index_cursor< index_t >
, seqan3::bitcompressed_vector< alphabet_type >
, seqan3::cigar
, seqan3::cigar_op
, seqan3::concatenated_sequences< inner_type, data_delimiters_type >
, seqan3::configuration< configs_t >
, seqan3::debug_stream_type
, seqan3::dna15
, seqan3::dna4
, seqan3::dna5
, seqan3::dot_bracket3
, seqan3::dssp9
, seqan3::end_gaps< ends_t >
, seqan3::file_validator_base
, seqan3::fm_index< is_collection, sdsl_index_type_ >
, seqan3::fm_index_cursor< index_t >
, seqan3::gap
, seqan3::gap_decorator< inner_type >
, seqan3::gap_scheme< score_t >
, seqan3::input_directory_validator
, seqan3::input_file_validator
, seqan3::mask
, seqan3::masked< sequence_alphabet_t >
, seqan3::output_directory_validator
, seqan3::output_file_validator
, seqan3::phred42
, seqan3::phred63
, seqan3::phred68legacy
, seqan3::qualified< sequence_alphabet_t, quality_alphabet_t >
, seqan3::record< field_types, field_ids >
, seqan3::rna15
, seqan3::rna4
, seqan3::rna5
, seqan3::sam_dna16
, seqan3::scoring_scheme_base< derived_t, alphabet_t, score_t >
, seqan3::search_cfg::max_error< errors_t >
, seqan3::search_cfg::max_error_rate< errors_t >
, seqan3::semialphabet_any< size >
, seqan3::sequence_file_input< traits_type_, selected_field_ids_, valid_formats_, stream_char_type_ >
, seqan3::sequence_file_output< selected_field_ids_, valid_formats_, stream_char_type_ >
, seqan3::small_string< capacity_ >
, seqan3::small_vector< value_type_, capacity_ >
, seqan3::static_band
, seqan3::structure_file_input< traits_type_, selected_field_ids_, valid_formats_, stream_char_type_ >
, seqan3::structure_file_output< selected_field_ids_, valid_formats_, stream_char_type_ >
, seqan3::structured_aa< sequence_alphabet_t, structure_alphabet_t >
, seqan3::structured_rna< sequence_alphabet_t, structure_alphabet_t >
, seqan3::wuss< SIZE >
, std::Assignable
- operator==()
: seqan3::aligned_allocator< value_t, alignment_v >
, seqan3::bi_fm_index< is_collection, sdsl_index_type_ >
, seqan3::bi_fm_index_cursor< index_t >
, seqan3::bitcompressed_vector< alphabet_type >
, seqan3::concatenated_sequences< inner_type, data_delimiters_type >
, seqan3::fm_index< is_collection, sdsl_index_type_ >
, seqan3::fm_index_cursor< index_t >
, seqan3::gap_decorator< inner_type >
, seqan3::gap_scheme< score_t >
, seqan3::pod_tuple< type0 >
, seqan3::pod_tuple< type0, types... >
, seqan3::scoring_scheme_base< derived_t, alphabet_t, score_t >
, seqan3::small_vector< value_type_, capacity_ >
, std::EqualityComparable
- operator>()
: seqan3::bitcompressed_vector< alphabet_type >
, seqan3::concatenated_sequences< inner_type, data_delimiters_type >
, seqan3::gap_decorator< inner_type >
, seqan3::pod_tuple< type0 >
, seqan3::pod_tuple< type0, types... >
, seqan3::small_vector< value_type_, capacity_ >
, std::StrictTotallyOrdered
- operator>=()
: seqan3::bitcompressed_vector< alphabet_type >
, seqan3::concatenated_sequences< inner_type, data_delimiters_type >
, seqan3::gap_decorator< inner_type >
, seqan3::pod_tuple< type0 >
, seqan3::pod_tuple< type0, types... >
, seqan3::small_vector< value_type_, capacity_ >
, std::StrictTotallyOrdered
- operator>>()
: seqan3::IStream
, seqan3::small_string< capacity_ >
- operator[]()
: seqan3::bitcompressed_vector< alphabet_type >
, seqan3::concatenated_sequences< inner_type, data_delimiters_type >
, seqan3::end_gaps< ends_t >
, seqan3::gap_decorator< inner_type >
, seqan3::small_vector< value_type_, capacity_ >
- operator|
: seqan3::alignment_file_output< selected_field_ids_, valid_formats_, stream_char_type_, ref_ids_type >
, seqan3::configuration< configs_t >
, seqan3::sequence_file_output< selected_field_ids_, valid_formats_, stream_char_type_ >
, seqan3::structure_file_output< selected_field_ids_, valid_formats_, stream_char_type_ >
- option_declared_multiple_times()
: seqan3::option_declared_multiple_times
- options
: seqan3::alignment_file_input< traits_type_, selected_field_ids_, valid_formats_, stream_char_type_ >
, seqan3::alignment_file_output< selected_field_ids_, valid_formats_, stream_char_type_, ref_ids_type >
, seqan3::sequence_file_input< traits_type_, selected_field_ids_, valid_formats_, stream_char_type_ >
, seqan3::sequence_file_output< selected_field_ids_, valid_formats_, stream_char_type_ >
, seqan3::structure_file_input< traits_type_, selected_field_ids_, valid_formats_, stream_char_type_ >
, seqan3::structure_file_output< selected_field_ids_, valid_formats_, stream_char_type_ >
- other
: seqan3::aligned_allocator< value_t, alignment_v >::rebind< new_value_type >
- output()
: seqan3::search_cfg::output< output_t >
- output_directory_validator()
: seqan3::output_directory_validator
- output_file_validator()
: seqan3::output_file_validator
- overflow_error_on_conversion()
: seqan3::overflow_error_on_conversion