Here is a list of all documented class members with links to the class documentation for each member:
- a -
- aa10li()
: seqan3::aa10li
- aa10li_vector
: seqan3::aa10li
- aa10murphy()
: seqan3::aa10murphy
- aa10murphy_vector
: seqan3::aa10murphy
- aa20()
: seqan3::aa20
- aa20_vector
: seqan3::aa20
- aa27()
: seqan3::aa27
- aa27_vector
: seqan3::aa27
- add_carriage_return
: seqan3::alignment_file_output_options
, seqan3::sequence_file_output_options
, seqan3::structure_file_output_options
- add_flag()
: seqan3::argument_parser
- add_line()
: seqan3::argument_parser
- add_list_item()
: seqan3::argument_parser
- add_option()
: seqan3::argument_parser
- add_positional_option()
: seqan3::argument_parser
- add_section()
: seqan3::argument_parser
- add_subsection()
: seqan3::argument_parser
- aligned_allocator()
: seqan3::aligned_allocator< value_t, alignment_v >
- aligned_ends()
: seqan3::align_cfg::aligned_ends< end_gaps_t >
- alignment
: seqan3::aligned_allocator< value_t, alignment_v >
, seqan3::alignment_result< alignment_result_traits >
- alignment_coordinate()
: seqan3::alignment_coordinate
- alignment_file_header()
: seqan3::alignment_file_header< ref_ids_type >
- alignment_file_input()
: seqan3::alignment_file_input< traits_type_, selected_field_ids_, valid_formats_, stream_char_type_ >
- alignment_file_output()
: seqan3::alignment_file_output< selected_field_ids_, valid_formats_, stream_char_type_, ref_ids_type >
- alignment_range()
: seqan3::alignment_range< alignment_executor_type >
- alignment_result()
: seqan3::alignment_result< alignment_result_traits >
- alignment_type
: seqan3::alignment_file_input< traits_type_, selected_field_ids_, valid_formats_, stream_char_type_ >
- allocate()
: seqan3::aligned_allocator< value_t, alignment_v >
- alphabet_base()
: seqan3::alphabet_base< derived_type, size, char_t >
, seqan3::alphabet_base< derived_type, 1ul, char_t >
- alphabet_size
: seqan3::alphabet_base< derived_type, size, char_t >
, seqan3::alphabet_base< derived_type, 1ul, char_t >
- alphabet_tuple_base()
: seqan3::alphabet_tuple_base< derived_type, component_types >
- alphabet_variant()
: seqan3::alphabet_variant< alternative_types >
- aminoacid_base()
: seqan3::aminoacid_base< derived_type, size >
- aminoacid_scoring_scheme()
: seqan3::aminoacid_scoring_scheme< score_type >
- app_name
: seqan3::argument_parser_meta_data
- argument_parser()
: seqan3::argument_parser
- arithmetic_range_validator()
: seqan3::arithmetic_range_validator
- assign()
: seqan3::bitcompressed_vector< alphabet_type >
, seqan3::concatenated_sequences< inner_type, data_delimiters_type >
, seqan3::small_string< capacity_ >
, seqan3::small_vector< value_type_, capacity_ >
- assign_char()
: seqan3::alphabet_base< derived_type, size, char_t >
, seqan3::alphabet_base< derived_type, 1ul, char_t >
, seqan3::cigar
, seqan3::masked< sequence_alphabet_t >
, seqan3::qualified< sequence_alphabet_t, quality_alphabet_t >
, seqan3::structured_aa< sequence_alphabet_t, structure_alphabet_t >
- assign_char_strictly()
: seqan3::masked< sequence_alphabet_t >
, seqan3::qualified< sequence_alphabet_t, quality_alphabet_t >
, seqan3::structured_rna< sequence_alphabet_t, structure_alphabet_t >
- assign_phred()
: seqan3::qualified< sequence_alphabet_t, quality_alphabet_t >
, seqan3::quality_base< derived_type, size >
- assign_rank()
: seqan3::alphabet_base< derived_type, size, char_t >
, seqan3::alphabet_base< derived_type, 1ul, char_t >
- assign_unaligned()
: seqan3::AlignedSequence
, seqan3::gap_decorator< inner_type >
- at()
: seqan3::bitcompressed_vector< alphabet_type >
, seqan3::concatenated_sequences< inner_type, data_delimiters_type >
, seqan3::gap_decorator< inner_type >
, seqan3::small_vector< value_type_, capacity_ >
- author
: seqan3::argument_parser_meta_data